nf-core/ectyper @ 0.0.0-0c7146d
Summary
In silico prediction of E. coli serotype
Get started
Add the following snippet to your workflow script to include this module.
include { ECTYPER } from 'nf-core/ectyper'
License
MIT License
Process
Name
|
ECTYPER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA formatted assembly file *.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
|
Output
4 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
ectyper log output *.log
|
#2
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
ectyper serotyping results in TSV format *.tsv
|
#3
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Allele report generated from BLAST results *.tst
|
#4
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| ectyper | ECtyper is a python program for serotyping E. coli genomes | https://github.com/phac-nml/ecoli_serotyping |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:36:41 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fectyper/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ectyper/blobs/sha256:95b3a451659fc851b7d421769b652f890e1b5bcaf55a0aa6b8da142acc995127 |
| Size | 2.4 KB |
| Checksum | sha256:95b3a451659fc851b7d421769b652f890e1b5bcaf55a0aa6b8da142acc995127 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:36:41 (UTC) | 1 | 2.4 KB | - |