nf-core/dshbio/exportsegments @ 0.0.0-e2d3f0d
Summary
Export assembly segment sequences in GFA 1.0 format to FASTA format
Get started
Add the following snippet to your workflow script to include this module.
include { DSHBIO_EXPORTSEGMENTS } from 'nf-core/dshbio/exportsegments'
License
MIT License
Process
Name
|
DSHBIO_EXPORTSEGMENTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gfa
file
|
Assembly segments in uncompressed or compressed GFA 1.0 format *.{gfa|gfa.bgz|gfa.gz|gfa.zst}
|
Output
2 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fa.gz
file
|
Assembly segment sequences in gzipped FASTA format *.{fa.gz}
|
#2
versions_dshbio
tuple
${task.process}
string
|
The name of the process |
|---|---|
dsh-bio
string
|
The name of the tool |
dsh-bio --version | sed '1!d;s/dsh-bio-tools //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| dshbio | Reads, features, variants, assemblies, alignments, genomic range trees, pangenome graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3 or later. | https://github.com/heuermh/dishevelled-bio |
| Version | 0.0.0-e2d3f0d |
|---|---|
| Commit ID | e2d3f0ddf4a74a4a9031f3caea2e9deaec5a440b |
| Release Date | 28 Apr 2026 21:15:19 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdshbio%2Fexportsegments/0.0.0-e2d3f0d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/dshbio/exportsegments/blobs/sha256:29196603ab38224427d113bc74f2101937406b6ccf0ff156f6aec4c713ceb712 |
| Size | 2.4 KB |
| Checksum | sha256:29196603ab38224427d113bc74f2101937406b6ccf0ff156f6aec4c713ceb712 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-e2d3f0d | 28 Apr 2026 21:15:19 (UTC) | 1 | 2.4 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:36:23 (UTC) | 1 | 2.3 KB | - |