nf-core/diamond/linclust @ 0.0.0-135d883
Summary
Fast protein sequence clustering using a greedy incremental approach
Get started
Add the following snippet to your workflow script to include this module.
include { DIAMOND_LINCLUST } from 'nf-core/diamond/linclust'
License
MIT License
Process
Name
|
DIAMOND_LINCLUST |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Input protein FASTA file to be clustered *.{fa,faa,fasta,fa.gz,faa.gz,fasta.gz}
|
Output
2 channels
#1
clusters
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.tsv
file
|
Tab-separated file mapping each member sequence to its cluster representative. The first column contains the representative accession and the second column contains the member sequence accession. *.tsv
|
#2
versions_diamond
tuple
${task.process}
string
|
The name of the process |
|---|---|
diamond
string
|
The name of the tool |
diamond --version | sed 's/diamond version //g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| diamond | Accelerated BLAST compatible local sequence aligner | https://github.com/bbuchfink/diamond |
| Version | 0.0.0-135d883 |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 23 Apr 2026 21:28:16 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdiamond%2Flinclust/0.0.0-135d883/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/diamond/linclust/blobs/sha256:49bb02298d0193fb55f5fb98bf3c9139a8d0d571e91185283b5263a08a253154 |
| Size | 2.4 KB |
| Checksum | sha256:49bb02298d0193fb55f5fb98bf3c9139a8d0d571e91185283b5263a08a253154 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-135d883 | 23 Apr 2026 21:28:16 (UTC) | 1 | 2.4 KB | - |