Nextflow Registry | nf-core/diamond/deepclust@0.0.0-91d94af

nf-core/diamond/deepclust @ 0.0.0-91d94af

Fast graph-based protein sequence clustering using DIAMOND deepclust

clustering protein diamond deepclust proteomics

Latest version: 0.0.0-91d94af

Total downloads: 1

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Fast graph-based protein sequence clustering using DIAMOND deepclust

Add the following snippet to your workflow script to include this module.

include { DIAMOND_DEEPCLUST } from 'nf-core/diamond/deepclust'

MIT License

Process

`Name`	`DIAMOND_DEEPCLUST`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fasta` file	Input protein FASTA file to be clustered `*.{fa,faa,fasta,fa.gz,faa.gz,fasta.gz}`

`save_aln` boolean	Whether to save clustering alignments to a file (--aln-out) WARNING: unusable in this version (2.1.24) of diamond due to bug, leaving as placeholder

Output 3 channels

#1 clusters tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}.tsv` file	Tab-separated file mapping each member sequence to its cluster representative. The first column contains the representative accession and the second column contains the member sequence accession. `*.tsv`

#2 alignment tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}.aln` file	Optional. Tab-separated file containing the clustering alignments, produced when save_aln is true (--aln-out). `*.aln`

#3 versions_diamond tuple

`${task.process}` string	The name of the process
`diamond` string	The name of the tool
`diamond --version \| sed 's/.* //g'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
diamond	Accelerated BLAST compatible local sequence aligner	https://github.com/bbuchfink/diamond

Version	0.0.0-91d94af
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	16 Apr 2026 21:15:21 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdiamond%2Fdeepclust/0.0.0-91d94af/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/diamond/deepclust/blobs/sha256:2e0409e16a5157f341274f965630be0eb26f9f204654d3a26ad1f329e7aed4b4
Size	2.6 KB
Checksum	sha256:2e0409e16a5157f341274f965630be0eb26f9f204654d3a26ad1f329e7aed4b4
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-91d94af	16 Apr 2026 21:15:21 (UTC)		1	2.6 KB	-