Nextflow Registry | nf-core/deeptools/plotfingerprint@0.0.0-0c7146d

nf-core/deeptools/plotfingerprint @ 0.0.0-0c7146d

plots cumulative reads coverages by BAM file

plot fingerprint cumulative coverage bam

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @edmundmiller @drpatelh @joseespinosa

Maintainers: @edmundmiller @drpatelh @joseespinosa

plots cumulative reads coverages by BAM file

Add the following snippet to your workflow script to include this module.

include { DEEPTOOLS_PLOTFINGERPRINT } from 'nf-core/deeptools/plotfingerprint'

MIT License

Process

`Name`	`DEEPTOOLS_PLOTFINGERPRINT`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`bams` file	BAM files `*.bam`
`bais` file	Corresponding BAM file indexes `*.bam.bai`

Output 4 channels

#1 pdf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.pdf` file	Output figure containing resulting plot `*.{plotFingerprint.pdf}`

#2 matrix tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.raw.txt` file	Output file summarizing the read counts per bin `*.{plotFingerprint.raw.txt}`

#3 metrics tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.qcmetrics.txt` file	file containing BAM file quality metrics `*.{qcmetrics.txt}`

#4 versions_deeptools tuple

`${task.process}` string	The name of the process
`deeptools` string	The name of the tool
`plotFingerprint --version \| sed "s/plotFingerprint //g"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
deeptools	A set of user-friendly tools for normalization and visualization of deep-sequencing data	n/a

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:35:35 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fplotfingerprint/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/deeptools/plotfingerprint/blobs/sha256:1a4bb40ec2ebe302952b04fc1a4734b46c8e706305bca969d90c28697a404391
Size	2.7 KB
Checksum	sha256:1a4bb40ec2ebe302952b04fc1a4734b46c8e706305bca969d90c28697a404391
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:35:35 (UTC)		1	2.7 KB	-