Nextflow Registry | nf-core/deeptools/plotcorrelation@0.0.0-0c7146d

nf-core/deeptools/plotcorrelation @ 0.0.0-0c7146d

Visualises sample correlations using a compressed matrix generated by mutlibamsummary or multibigwigsummary as input.

corrrelation matrix heatmap scatterplot

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @tamara-hodgetts @chris-cheshire @joseespinosa

Maintainers: @tamara-hodgetts @chris-cheshire @joseespinosa

Visualises sample correlations using a compressed matrix generated by mutlibamsummary or multibigwigsummary as input.

Add the following snippet to your workflow script to include this module.

include { DEEPTOOLS_PLOTCORRELATION } from 'nf-core/deeptools/plotcorrelation'

MIT License

Process

`Name`	`DEEPTOOLS_PLOTCORRELATION`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`matrix` file	compressed matrix file produced by mutlibamsummary or multibigwigsummary `*.{npz}`

`method` string	Correlation coefficient to use for heatmap or scatterplot generation `{spearman,pearson}`

`plot_type` string	Type of output plot to display sample correlation `{heatmap,scatterplot}`

Output 3 channels

#1 pdf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.pdf` file	Output figure containing resulting plot `*.{plotCorrelation.pdf}`

#2 matrix tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tab` file	Tab-separated file containing a matrix of pairwise correlations `*.{plotCorrelation.mat.tab}`

#3 versions_deeptools tuple

`${task.process}` string	The name of the process
`deeptools` string	The name of the tool
`plotCorrelation --version \| sed "s/plotCorrelation //g"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
deeptools	A set of user-friendly tools for normalization and visualization of deep-sequencing data	n/a

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:35:32 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fplotcorrelation/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/deeptools/plotcorrelation/blobs/sha256:5e854626055b5474583b2f1a7b5ea50dd6bc98387de59785a2bfa96722289dfd
Size	2.9 KB
Checksum	sha256:5e854626055b5474583b2f1a7b5ea50dd6bc98387de59785a2bfa96722289dfd
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:35:32 (UTC)		1	2.9 KB	-