Nextflow Registry | nf-core/deeptools/multibamsummary@0.0.0-0c7146d

nf-core/deeptools/multibamsummary @ 0.0.0-0c7146d

Computes read coverage for genomic regions (bins) across the entire genome.

bam coverage genome bin

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @tamara-hodgetts @chris-cheshire @joseespinosa

Maintainers: @tamara-hodgetts @chris-cheshire @joseespinosa

Computes read coverage for genomic regions (bins) across the entire genome.

Add the following snippet to your workflow script to include this module.

include { DEEPTOOLS_MULTIBAMSUMMARY } from 'nf-core/deeptools/multibamsummary'

MIT License

Process

`Name`	`DEEPTOOLS_MULTIBAMSUMMARY`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bams` file	One or more BAM files `*.{bam}`
`bais` file	Corresponding BAM file indexes `*.bam.bai`
`labels` string	User specified labels instead of default labels (file names).

#2 tuple

`meta2` map	Groovy Map containing blacklist metadata e.g. [ id:'blacklist' ]
`blacklist` file	BED/GTF file containing regions to exclude from analysis `*.{bed,gtf}`

Output 2 channels

#1 matrix tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.npz` file	compressed numpy array of read coverage data used by plotCorrelation and plotPCA deeptool utilities `all_bam.bamSummary.npz`

#2 versions_deeptools tuple

`${task.process}` string	The name of the process
`deeptools` string	The name of the tool
`multiBamSummary --version \| sed "s/multiBamSummary //g"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
deeptools	A set of user-friendly tools for normalization and visualization of deep-sequencing data	n/a

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:35:29 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fmultibamsummary/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/deeptools/multibamsummary/blobs/sha256:abea0f0f81dedb759f5f86cb3336d46cff16cd22739adf0ef980c7c33a07666c
Size	2.7 KB
Checksum	sha256:abea0f0f81dedb759f5f86cb3336d46cff16cd22739adf0ef980c7c33a07666c
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:35:29 (UTC)		1	2.7 KB	-