nf-core/deeptools/bigwigcompare @ 0.0.0-0c7146d
Summary
Compare two bigWig files based on the number of mapped reads
Get started
Add the following snippet to your workflow script to include this module.
include { DEEPTOOLS_BIGWIGCOMPARE } from 'nf-core/deeptools/bigwigcompare'
License
MIT License
Process
Name
|
DEEPTOOLS_BIGWIGCOMPARE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
bigwig1
file
|
First bigWig file (usually treatment) *.{bw,bigwig,bigWig}
|
bigwig2
file
|
Second bigWig file (usually control) *.{bw,bigwig,bigWig}
|
#2
tuple
meta2
map
|
Groovy Map containing blacklist metadata e.g. [ id:'blacklist' ] |
|---|---|
blacklist
file
|
BED/GTF file containing regions to exclude from analysis *.{bed,gtf}
|
Output
2 channels
#1
output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.{bigWig,bedgraph}
file
|
Output bigWig or bedGraph file with comparison results *.{bigWig,bedgraph}
|
#2
versions_deeptools
tuple
${task.process}
string
|
The name of the process |
|---|---|
deeptools
string
|
The name of the tool |
bigwigCompare --version | sed "s/bigwigCompare //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deeptools | A set of user-friendly tools for normalization and visualization of deep-sequencing data | https://deeptools.readthedocs.io/en/develop/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:35:25 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fbigwigcompare/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/deeptools/bigwigcompare/blobs/sha256:f52132542407f22ed07952a7a27bbb2f32e9920fa316115e6268f0792eaa9950 |
| Size | 2.9 KB |
| Checksum | sha256:f52132542407f22ed07952a7a27bbb2f32e9920fa316115e6268f0792eaa9950 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:35:25 (UTC) | 1 | 2.9 KB | - |