Nextflow Registry | nf-core/dastool/scaffolds2bin@0.0.0-0c7146d

nf-core/dastool/scaffolds2bin @ 0.0.0-0c7146d

Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format

binning das tool table de novo bins contigs assembly das_tool

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @maxibor

Maintainers: @maxibor

Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format

Add the following snippet to your workflow script to include this module.

include { DASTOOL_SCAFFOLDS2BIN } from 'nf-core/dastool/scaffolds2bin'

MIT License

Process

`Name`	`DASTOOL_SCAFFOLDS2BIN`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	Fasta or list of fasta files recommended to be gathered via with .collect() of bins `*.{fa,fa.gz,fas,fas.gz,fna,fna.gz,fasta,fasta.gz}`

`extension` string	Fasta file extension (fa \| fas \| fasta \| ...), but without .gz suffix, even if gzipped input.

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 scaffolds2bin tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tsv` file	tabular scaffolds2bin file for DAS tool input `*.scaffolds2bin.tsv`

Tool	Description	Homepage
dastool	DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly.	https://github.com/cmks/DAS_Tool

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:34:24 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdastool%2Fscaffolds2bin/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/dastool/scaffolds2bin/blobs/sha256:4d4223b2d9a10e33775e66c82f98e3ed8d3ca65598be76092ba3f52dc4c8ab53
Size	2.6 KB
Checksum	sha256:4d4223b2d9a10e33775e66c82f98e3ed8d3ca65598be76092ba3f52dc4c8ab53
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:34:24 (UTC)		1	2.6 KB	-