Nextflow Registry | nf-core/dastool/fastatocontig2bin@0.0.0-0c7146d

nf-core/dastool/fastatocontig2bin @ 0.0.0-0c7146d

Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format

binning das tool table de novo bins contigs assembly das_tool

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @maxibor @jfy133

Maintainers: @maxibor @jfy133

Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format

Add the following snippet to your workflow script to include this module.

include { DASTOOL_FASTATOCONTIG2BIN } from 'nf-core/dastool/fastatocontig2bin'

MIT License

Process

`Name`	`DASTOOL_FASTATOCONTIG2BIN`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	Fasta of list of fasta files recommended to be gathered via with .collect() of bins `*.{fa,fa.gz,fas,fas.gz,fna,fna.gz,fasta,fasta.gz}`

`extension` string	Fasta file extension (fa \| fas \| fasta \| ...), without .gz suffix, if gzipped input.

Output 2 channels

#1 versions_dastool tuple

`${task.process}` string	The process the versions were collected from
`dastool` string	The tool name
`DAS_Tool --version 2>&1 \| grep "DAS Tool" \| sed "s/DAS Tool //"` eval	The expression to obtain the version of the tool

#2 fastatocontig2bin tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tsv` file	tabular contig2bin file for DAS tool input `*.tsv`

Tool	Description	Homepage
dastool	DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly.	https://github.com/cmks/DAS_Tool

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:34:22 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdastool%2Ffastatocontig2bin/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/dastool/fastatocontig2bin/blobs/sha256:787bb7bb06bc3e21a270705c81fcc7fb4b88301fbccd1324d0a83a898e9d3751
Size	2.8 KB
Checksum	sha256:787bb7bb06bc3e21a270705c81fcc7fb4b88301fbccd1324d0a83a898e9d3751
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:34:22 (UTC)		1	2.8 KB	-