nf-core/custom/summarisetelomereestimation @ 0.0.0-0c7146d
Summary
Normalise and combine telomere length and content estimates from telseq, telogator2, and telomerehunter into a unified summary
Get started
Add the following snippet to your workflow script to include this module.
include { CUSTOM_SUMMARISETELOMEREESTIMATION } from 'nf-core/custom/summarisetelomereestimation'
License
MIT License
Process
Name
|
CUSTOM_SUMMARISETELOMEREESTIMATION |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
length_tsv
file
|
TSV file from telseq or telogator2 with telomere length estimates *.tsv
|
content_tsv
file
|
Optional TSV file from telomerehunter with telomere content estimates *.tsv
|
length_tool
string
|
Which tool produced the length TSV ('telseq' or 'telogator2') |
Output
2 channels
#1
summary
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*_telomere_summary.tsv
file
|
Unified summary TSV with normalised telomere length (kb) and content metrics *_telomere_summary.tsv
|
#2
versions
versions.yml
file
|
YAML file containing versions of tools used in the module |
|---|
| Tool | Description | Homepage |
|---|---|---|
| pandas | Python Data Analysis Library | https://pandas.pydata.org/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:34:05 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Fsummarisetelomereestimation/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/custom/summarisetelomereestimation/blobs/sha256:92a952f9487258fdb0b71e370a836625a74492cb3f071f9fc60154aa5dc1f415 |
| Size | 3.7 KB |
| Checksum | sha256:92a952f9487258fdb0b71e370a836625a74492cb3f071f9fc60154aa5dc1f415 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:34:05 (UTC) | 1 | 3.7 KB | - |