Nextflow Registry | nf-core/custom/gtffilter@0.0.0-0c7146d

nf-core/custom/gtffilter @ 0.0.0-0c7146d

Filter a gtf file to keep only regions that are located on a chromosome represented in a given fasta file

gtf fasta filter

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @nictru

Maintainers: @nictru

Filter a gtf file to keep only regions that are located on a chromosome represented in a given fasta file

Add the following snippet to your workflow script to include this module.

include { CUSTOM_GTFFILTER } from 'nf-core/custom/gtffilter'

MIT License

Process

`Name`	`CUSTOM_GTFFILTER`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`gtf` file	GTF file `*.{gtf}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fasta` file	Genome fasta file `*.{fasta,fa}`

Output 2 channels

#1 gtf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}.${suffix}` file	Filtered GTF file `*.{gtf}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
gtffilter	Filter a gtf file to keep only regions that are located on a chromosome represented in a given fasta file	n/a

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:33:57 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Fgtffilter/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/custom/gtffilter/blobs/sha256:dd41bea43f23195d39f953d4ef592079b6cedc683fe696174c782f753d437e3d
Size	4.3 KB
Checksum	sha256:dd41bea43f23195d39f953d4ef592079b6cedc683fe696174c782f753d437e3d
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:33:57 (UTC)		1	4.3 KB	-