nf-core/custom/getchromsizes @ 0.0.0-0c7146d
Summary
Generates a FASTA file of chromosome sizes and a fasta index file
Get started
Add the following snippet to your workflow script to include this module.
include { CUSTOM_GETCHROMSIZES } from 'nf-core/custom/getchromsizes'
License
MIT License
Process
Name
|
CUSTOM_GETCHROMSIZES |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA file *.{fa,fasta,fna,fas}
|
Output
4 channels
#1
fai
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fai
file
|
FASTA index file *.{fai}
|
#2
gzi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gzi
file
|
Optional gzip index file for compressed inputs *.gzi
|
#3
sizes
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sizes
file
|
File containing chromosome lengths *.{sizes}
|
#4
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| samtools | Tools for dealing with SAM, BAM and CRAM files | http://www.htslib.org/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:33:55 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Fgetchromsizes/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/custom/getchromsizes/blobs/sha256:7579959f13b9fe41fabdfa131308273d4bbe0ed47595896bdbd986459c994ba1 |
| Size | 2.7 KB |
| Checksum | sha256:7579959f13b9fe41fabdfa131308273d4bbe0ed47595896bdbd986459c994ba1 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:33:55 (UTC) | 1 | 2.7 KB | - |