nf-core/csvtk/mutate2 @ 0.0.0-0c7146d
Summary
Create a new column from selected fields by awk-like arithmetic/string expressions
Get started
Add the following snippet to your workflow script to include this module.
include { CSVTK_MUTATE2 } from 'nf-core/csvtk/mutate2'
License
MIT License
Process
Name
|
CSVTK_MUTATE2 |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
CSV/TSV formatted files, or files with a custom delimiter *.{csv,tsv}
|
in_format
string
|
Input format (csv, tsv, or a delimiting character) *
|
|---|
out_format
string
|
Output format (csv, tsv, or a delimiting character) *
|
|---|
Output
2 channels
#1
output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.${out_extension}
file
|
Mutated CSV/TSV file *.{csv,tsv}
|
#2
versions_csvtk
tuple
${task.process}
string
|
The name of the process |
|---|---|
csvtk
string
|
The name of the tool |
csvtk version | sed -e 's/csvtk v//g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| csvtk | A cross-platform, efficient, practical CSV/TSV toolkit | http://bioinf.shenwei.me/csvtk |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:33:32 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcsvtk%2Fmutate2/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/csvtk/mutate2/blobs/sha256:a7c4c1e739a4d10ac5cdf108eef58e3bf99f45f0c47502effaf762acd6069e6f |
| Size | 2.5 KB |
| Checksum | sha256:a7c4c1e739a4d10ac5cdf108eef58e3bf99f45f0c47502effaf762acd6069e6f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:33:32 (UTC) | 1 | 2.5 KB | - |