Nextflow Registry | nf-core/crispresso2@0.0.0-0c7146d

nf-core/crispresso2 @ 0.0.0-0c7146d

A software pipeline for the analysis of genome editing outcomes from deep sequencing data

genome editing CRISPR sequencing amplicon

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @sathyasjali

Maintainers: @sathyasjali

A software pipeline for the analysis of genome editing outcomes from deep sequencing data

Add the following snippet to your workflow script to include this module.

include { CRISPRESSO2 } from 'nf-core/crispresso2'

MIT License

Process

`Name`	`CRISPRESSO2`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`reads` file	List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. `*.{fastq,fq,fastq.gz,fq.gz}`

Output 4 channels

#1 txt tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`CRISPResso_on_/.txt` file	CRISPResso text output files `CRISPResso_on_/.txt`

#2 html tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.html` file	CRISPResso HTML report `*.html`

#3 results tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`CRISPResso_on_*` directory	CRISPResso output directory `CRISPResso_on_*`

#4 versions_crispresso2 tuple

`${task.process}` string	The name of the process
`crispresso2` string	The name of the tool
`CRISPResso --version 2>&1 \| sed 's/CRISPResso //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
crispresso2	CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments.	https://crispresso.pinellolab.partners.org/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:33:25 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcrispresso2/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/crispresso2/blobs/sha256:16441c04b9ecf3e63d74834e2b8c5f0e5b8bc0e88422730dfb605bb2b298a2b9
Size	3.1 KB
Checksum	sha256:16441c04b9ecf3e63d74834e2b8c5f0e5b8bc0e88422730dfb605bb2b298a2b9
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:33:25 (UTC)		1	3.1 KB	-