Nextflow Registry | nf-core/crisprcleanr/normalize@0.0.0-0c7146d

nf-core/crisprcleanr/normalize @ 0.0.0-0c7146d

remove false positives of functional crispr genomics due to CNVs

sort CNV correction CRISPR

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @LaurenceKuhl

Maintainers: @LaurenceKuhl

remove false positives of functional crispr genomics due to CNVs

Add the following snippet to your workflow script to include this module.

include { CRISPRCLEANR_NORMALIZE } from 'nf-core/crisprcleanr/normalize'

MIT License

Process

`Name`	`CRISPRCLEANR_NORMALIZE`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`count_file` file	sgRNA raw counts `*.tsv`
`library_file` file	sgRNA library `*.tsv`

`min_reads` integer	Minimum number of reads

`min_targeted_genes` integer	Minimum number of targeted genes

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 norm_count_file tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_norm_table.tsv` file	normalized count file `*.tsv`

Tool	Description	Homepage
crisprcleanr	Analysis of CRISPR functional genomics, remove false positive due to CNVs.	https://github.com/francescojm/CRISPRcleanR

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:33:23 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcrisprcleanr%2Fnormalize/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/crisprcleanr/normalize/blobs/sha256:be152011fa7fb51845836ad753e08c5df551cf1f97341481ded9c30aa433dec8
Size	2.9 KB
Checksum	sha256:be152011fa7fb51845836ad753e08c5df551cf1f97341481ded9c30aa433dec8
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:33:23 (UTC)		1	2.9 KB	-