Nextflow Registry | nf-core/cramino@0.0.0-0c7146d

nf-core/cramino @ 0.0.0-0c7146d

Quality assessment of long-read bam files using cramino.

quality assessment bam long-read genomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @inemesb

Maintainers: @inemesb

Quality assessment of long-read bam files using cramino.

Add the following snippet to your workflow script to include this module.

include { CRAMINO } from 'nf-core/cramino'

MIT License

Process

`Name`	`CRAMINO`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`bam` file	BAM/CRAM file `*.{bam,cram}`
`bai` file	Index of BAM/CRAM file `*.{bai,crai,csi}`

Output 3 channels

#1 arrow tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.arrow` file	Arrow file containing summary statistics of the long-read data `*.arrow`

#2 stats tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.txt` file	Text file containing summary statistics of the long-read data `*.txt`

#3 versions_cramino tuple

`${task.process}` string	The name of the process
`cramino` string	The name of the tool
`cramino -V \| sed 's/cramino //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
cramino	A tool for very fast quality assessment of long read cram/bam files.	https://github.com/wdecoster/cramino

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:33:21 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcramino/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cramino/blobs/sha256:f61ab04e64787364a44f54f214bb11be21bce35efe6c8c3ecc830bb526d0ba71
Size	2.8 KB
Checksum	sha256:f61ab04e64787364a44f54f214bb11be21bce35efe6c8c3ecc830bb526d0ba71
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:33:21 (UTC)		1	2.8 KB	-