nf-core/coptr/index @ 0.0.0-0c7146d
Summary
Indexes a directory of fasta files for use with CoPTR
Get started
Add the following snippet to your workflow script to include this module.
include { COPTR_INDEX } from 'nf-core/coptr/index'
License
MIT License
Process
Name
|
COPTR_INDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing genome information |
|---|---|
indexfasta
file
|
Fasta file(s) ending in [.fasta, .fna, .fa] to be used to create the index. *.{.fasta,.fna,.fa}
|
Output
2 channels
#1
index_dir
tuple
meta
map
|
Groovy Map containing genome information |
|---|---|
bowtie2
map
|
index genome directory *.{genome}
|
#2
versions_coptr
tuple
${task.process}
string
|
The name of the process |
|---|---|
coptr
string
|
The name of the tool |
coptr |& sed -E '11!d ; s/CoPTR.*?\(v(.*?)\).*/\1/'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| coptr | Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads. | https://github.com/tyjo/coptr |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:33:01 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcoptr%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/coptr/index/blobs/sha256:d119f5c2573a6465df832f49f7be1451c7fa35973ad0e906c8d3dd430e3c5eb7 |
| Size | 2.5 KB |
| Checksum | sha256:d119f5c2573a6465df832f49f7be1451c7fa35973ad0e906c8d3dd430e3c5eb7 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:33:01 (UTC) | 1 | 2.5 KB | - |