nf-core/cooler/digest @ 0.0.0-0c7146d
Summary
Generate fragment-delimited genomic bins
Get started
Add the following snippet to your workflow script to include this module.
include { COOLER_DIGEST } from 'nf-core/cooler/digest'
License
MIT License
Process
Name
|
COOLER_DIGEST |
|---|
Input
3 channels
fasta
file
|
Genome assembly FASTA file or folder containing FASTA files (uncompressed). *.{fasta,fa}
|
|---|
chromsizes
file
|
Path to a chromsizes file. |
|---|
enzyme
string
|
Name of restriction enzyme. e.g. CviQI. |
|---|
Output
2 channels
#1
bed
*.bed
file
|
A genome segmentation of restriction fragments as a BED file. *.{bed}
|
|---|
#2
versions_cooler
tuple
${task.process}
string
|
The name of the process |
|---|---|
cooler
string
|
The name of the tool |
cooler --version 2>&1 | sed "s/cooler, version //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cooler | Sparse binary format for genomic interaction matrices | https://open2c.github.io/cooler/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:32:44 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcooler%2Fdigest/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cooler/digest/blobs/sha256:03a214938bdae7b1d728c84926a483663cc66fe6d6ac40d6156b966de4b3d80f |
| Size | 2.1 KB |
| Checksum | sha256:03a214938bdae7b1d728c84926a483663cc66fe6d6ac40d6156b966de4b3d80f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:32:44 (UTC) | 1 | 2.1 KB | - |