nf-core/controlfreec/makegraph @ 0.0.0-0c7146d
Summary
Plot Freec output
Get started
Add the following snippet to your workflow script to include this module.
include { CONTROLFREEC_MAKEGRAPH } from 'nf-core/controlfreec/makegraph'
License
MIT License
Process
Name
|
CONTROLFREEC_MAKEGRAPH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
ratio
file
|
ratio file generated by FREEC *.ratio.txt
|
baf
file
|
.BAF file generated by FREEC *.BAF
|
ploidy
integer
|
Ploidy value for which graph should be created |
Output
4 channels
#1
png_baf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_BAF.png
file
|
Image of BAF plot *_BAF.png
|
#2
png_ratio
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_ratio.png
file
|
Image of ratio plot *_ratio.png
|
#3
png_ratio_log2
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_ratio.log2.png
file
|
Image of ratio log2 plot *_ratio.log2.png
|
#4
versions_controlfreec
tuple
${task.process}
string
|
The name of the process |
|---|---|
controlfreec
string
|
The name of the tool |
11.6b
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| controlfreec | Copy number and genotype annotation from whole genome and whole exome sequencing data. | http://boevalab.inf.ethz.ch/FREEC |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:32:36 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcontrolfreec%2Fmakegraph/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/controlfreec/makegraph/blobs/sha256:f95a723d1d9c1b5eb877b9e06359429b27479c9b90190ecc8e38c15fea0b6b97 |
| Size | 3.3 KB |
| Checksum | sha256:f95a723d1d9c1b5eb877b9e06359429b27479c9b90190ecc8e38c15fea0b6b97 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:32:36 (UTC) | 1 | 3.3 KB | - |