Nextflow Registry | nf-core/concoct/cutupfasta@0.0.0-0c7146d

nf-core/concoct/cutupfasta @ 0.0.0-0c7146d

Cut up fasta file in non-overlapping or overlapping parts of equal length.

contigs fragment mags binning fasta cut cut up

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Cut up fasta file in non-overlapping or overlapping parts of equal length.

Add the following snippet to your workflow script to include this module.

include { CONCOCT_CUTUPFASTA } from 'nf-core/concoct/cutupfasta'

MIT License

Process

`Name`	`CONCOCT_CUTUPFASTA`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	(Uncompressed) FASTA file containing contigs `*.{fasta,fna,fa,fas}`

`bed` boolean	Specify whether to generate a BED file describing where each contig was cut up

Output 3 channels

#1 bed tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.bed` file	Optional BED File containing locations on original contigs where they were cut up. `*.bed`

#2 fasta tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.fasta` file	Cut up fasta file in non-overlapping or overlapping parts of equal length. `*.fasta`

#3 versions_concoct tuple

`${task.process}` string	The name of the process
`concoct` string	The name of the tool
`concoct --version \| cut -d " " -f2` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
concoct	Clustering cONtigs with COverage and ComposiTion	https://concoct.readthedocs.io/en/latest/index.html

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:32:22 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fconcoct%2Fcutupfasta/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/concoct/cutupfasta/blobs/sha256:a3f4c29e847227adf338d1f3d2fb58531be3db474ebc76b9ad5ec36a25af74b4
Size	2.5 KB
Checksum	sha256:a3f4c29e847227adf338d1f3d2fb58531be3db474ebc76b9ad5ec36a25af74b4
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:32:22 (UTC)		1	2.5 KB	-