Nextflow Registry | nf-core/concoct/concoctcoveragetable@0.0.0-0c7146d

nf-core/concoct/concoctcoveragetable @ 0.0.0-0c7146d

Generate the input coverage table for CONCOCT using a BEDFile

contigs fragment mags binning bed bam subcontigs coverage

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Generate the input coverage table for CONCOCT using a BEDFile

Add the following snippet to your workflow script to include this module.

include { CONCOCT_CONCOCTCOVERAGETABLE } from 'nf-core/concoct/concoctcoveragetable'

MIT License

Process

`Name`	`CONCOCT_CONCOCTCOVERAGETABLE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bed` file	BED file describing where each contig was cut up (typically output from CONCOCT's cut_up_fasta.py) `*.bed`
`bamfiles` file	A single or list of BAM files of reads mapped back to original contigs (prior cutting up) `*.bam`
`baifiles` file	A single or list of BAM index files (.bai) corresponding to BAM `*.bam`

Output 2 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tsv` file	Contig coverage table `*.tsv`

#2 versions_concoct tuple

`${task.process}` string	The name of the process
`concoct` string	The name of the tool
`concoct --version \| cut -d " " -f2` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
concoct	Clustering cONtigs with COverage and ComposiTion	https://concoct.readthedocs.io/en/latest/index.html

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:32:20 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fconcoct%2Fconcoctcoveragetable/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/concoct/concoctcoveragetable/blobs/sha256:fa9ac20fad6e77cc568610001fd7827a146cfe0ea55b7506f251558d4b8e615d
Size	2.6 KB
Checksum	sha256:fa9ac20fad6e77cc568610001fd7827a146cfe0ea55b7506f251558d4b8e615d
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:32:20 (UTC)		1	2.6 KB	-