nf-core/cnvpytor/partition @ 0.0.0-0c7146d
Summary
Calculate segmentation for specified bin size (multiple bin sizes separate by space)
Get started
Add the following snippet to your workflow script to include this module.
include { CNVPYTOR_PARTITION } from 'nf-core/cnvpytor/partition'
License
MIT License
Process
Name
|
CNVPYTOR_PARTITION |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
pytor
file
|
pytor file containing read depth data *.{pytor}
|
bin_sizes
string
|
list of binsizes separated by space e.g. "1000 10000" default is "1000" |
|---|
Output
2 channels
#1
pytor
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}.pytor
file
|
pytor file *.pytor
|
#2
versions_cnvpytor
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
cnvpytor
string
|
The tool name |
cnvpytor --version 2>&1 | sed -n 's/.*CNVpytor //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cnvpytor | Calling CNVs using read depth | https://github.com/abyzovlab/CNVpytor |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:32:04 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcnvpytor%2Fpartition/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cnvpytor/partition/blobs/sha256:90597fab58a3eaa3ca66331f0af92437e1b7ff7829cb435153de518480666679 |
| Size | 2.3 KB |
| Checksum | sha256:90597fab58a3eaa3ca66331f0af92437e1b7ff7829cb435153de518480666679 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:32:04 (UTC) | 1 | 2.3 KB | - |