nf-core/cnvkit/export @ 0.0.0-0c7146d
Summary
Convert copy number ratio tables (.cnr files) or segments (.cns) to another format.
Get started
Add the following snippet to your workflow script to include this module.
include { CNVKIT_EXPORT } from 'nf-core/cnvkit/export'
License
MIT License
Process
Name
|
CNVKIT_EXPORT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
cns
file
|
CNVKit CNS file. *.cns
|
Output
2 channels
#1
output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.${suffix}
file
|
Output file |
#2
versions_cnvkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
cnvkit
string
|
The name of the tool |
cnvkit.py version | sed -e "s/cnvkit v//g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cnvkit | CNVkit is a Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent. | https://cnvkit.readthedocs.io/en/stable/index.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:31:47 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcnvkit%2Fexport/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cnvkit/export/blobs/sha256:e4c198404a0a43f7217d486da25ebf402905dccfe27d19c9ea87b2f8acc321ec |
| Size | 2.8 KB |
| Checksum | sha256:e4c198404a0a43f7217d486da25ebf402905dccfe27d19c9ea87b2f8acc321ec |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:31:47 (UTC) | 1 | 2.8 KB | - |