nf-core/circexplorer2/annotate @ 0.0.0-0c7146d
Summary
Annotate circRNAs detected in the output from CIRCexplorer2 parse
Get started
Add the following snippet to your workflow script to include this module.
include { CIRCEXPLORER2_ANNOTATE } from 'nf-core/circexplorer2/annotate'
License
MIT License
Process
Name
|
CIRCEXPLORER2_ANNOTATE |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
junctions
file
|
Reformatted junctions file *.{junction}
|
fasta
file
|
Genome FASTA file *.{fa,fasta}
|
|---|
gene_annotation
file
|
Reformatted GTF file for CIRCexplorer2 *.{txt}
|
|---|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Annotated circRNA TXT file *.{txt}
|
#2
versions_circexplorer2
tuple
${task.process}
string
|
The name of the process |
|---|---|
circexplorer2
string
|
The name of the tool |
CIRCexplorer2 --version 2>&1; true
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| circexplorer2 | Circular RNA analysis toolkits | https://github.com/YangLab/CIRCexplorer2/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:30:45 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcircexplorer2%2Fannotate/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/circexplorer2/annotate/blobs/sha256:5c62dfbc2ff2548ff09b261ad1ef7038ab4dcd8d4c9eb12921e56fda609ba44e |
| Size | 2.2 KB |
| Checksum | sha256:5c62dfbc2ff2548ff09b261ad1ef7038ab4dcd8d4c9eb12921e56fda609ba44e |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:30:45 (UTC) | 1 | 2.2 KB | - |