nf-core/checkqc @ 0.0.0-0c7146d
Summary
A simple program to parse Illumina NGS data and check it for quality criteria
Get started
Add the following snippet to your workflow script to include this module.
include { CHECKQC } from 'nf-core/checkqc'
License
MIT License
Process
Name
|
CHECKQC |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
run_dir
file
|
Illumina sequencing run directory Can be directory or a compressed tar (tar.gz) of the directory |
checkqc_config
file
|
CheckQC configuration file *.{yml,yaml}
|
|---|
Output
2 channels
#1
report
tuple
meta
file
|
CheckQC report in json format *checkqc_report.json
|
|---|---|
*checkqc_report.json
file
|
CheckQC report in json format *checkqc_report.json
|
#2
versions_checkqc
tuple
${task.process}
string
|
The name of the process |
|---|---|
checkqc
string
|
The name of the tool |
checkqc --version | sed -e "s/checkqc, version //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| checkqc | A simple program to parse Illumina NGS data and check it for quality criteria. | https://github.com/Molmed/checkQC |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:30:27 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcheckqc/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/checkqc/blobs/sha256:cdd9d20afc64442f8dffe6f938b0ba7632b5d30aa8ee1dbefbd79da59ff8c0e4 |
| Size | 3.4 KB |
| Checksum | sha256:cdd9d20afc64442f8dffe6f938b0ba7632b5d30aa8ee1dbefbd79da59ff8c0e4 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:30:27 (UTC) | 1 | 3.4 KB | - |