nf-core/checkm2/predict @ 0.0.0-0c7146d
Summary
CheckM2 bin quality prediction
Get started
Add the following snippet to your workflow script to include this module.
include { CHECKM2_PREDICT } from 'nf-core/checkm2/predict'
License
MIT License
Process
Name
|
CHECKM2_PREDICT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
One or multiple FASTA files of each bin *.{fasta,fna,fa}
|
#2
tuple
dbmeta
map
|
Groovy Map containing database information e.g. |
|---|---|
db
file
|
CheckM2 database |
Output
3 channels
#1
checkm2_tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}_checkm2_report.tsv
file
|
CheckM2 summary completeness statistics table *.tsv
|
#2
checkm2_output
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}
directory
|
CheckM2 output directory ${prefix}/
|
#3
versions_checkm2_predict
tuple
${task.process}
string
|
The name of the process |
|---|---|
checkm2
string
|
The name of the tool |
checkm2 --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| checkm2 | CheckM2 - Rapid assessment of genome bin quality using machine learning | https://github.com/chklovski/CheckM2 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:30:25 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcheckm2%2Fpredict/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/checkm2/predict/blobs/sha256:00b134da7a376dff59e59176e39fc6c2c3407e28d7333998f8a3d7cab3adc234 |
| Size | 2.7 KB |
| Checksum | sha256:00b134da7a376dff59e59176e39fc6c2c3407e28d7333998f8a3d7cab3adc234 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:30:25 (UTC) | 1 | 2.7 KB | - |