Nextflow Registry | nf-core/checkm2/databasedownload@0.0.0-0c7146d

nf-core/checkm2/databasedownload @ 0.0.0-0c7146d

CheckM2 database download

checkm mag metagenome quality completeness contamination bins

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @dialvarezs @eit-maxlcummins

CheckM2 database download

Add the following snippet to your workflow script to include this module.

include { CHECKM2_DATABASEDOWNLOAD } from 'nf-core/checkm2/databasedownload'

MIT License

Process

`Name`	`CHECKM2_DATABASEDOWNLOAD`

Input 1 channel

`db_zenodo_id` integer	Zenodo ID of the CheckM2 database to download

Output 2 channels

#1 database tuple

`meta` map	Groovy Map containing database information e.g. `[ id:'test', version:1 ]`
`checkm2_db_v${db_version}.dmnd` file	CheckM2 database file `checkm2_db_v*.dmnd`

#2 versions_checkm2_databasedownload tuple

`${task.process}` string	The process the versions were collected from
`aria2` string	The tool name
`aria2c --version 2>&1 \| sed '1s/[^ ]* [^ ]* //; q'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
checkm2	CheckM2 - Rapid assessment of genome bin quality using machine learning	https://github.com/chklovski/CheckM2

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:30:23 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcheckm2%2Fdatabasedownload/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/checkm2/databasedownload/blobs/sha256:3609e76d797a522ca69d83cc22bb73d66838eb93041f84859417308e42bbef14
Size	2.7 KB
Checksum	sha256:3609e76d797a522ca69d83cc22bb73d66838eb93041f84859417308e42bbef14
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:30:23 (UTC)		1	2.7 KB	-