nf-core/centrifuge/kreport @ 0.0.0-0c7146d
Summary
Creates Kraken-style reports from centrifuge out files
Get started
Add the following snippet to your workflow script to include this module.
include { CENTRIFUGE_KREPORT } from 'nf-core/centrifuge/kreport'
License
MIT License
Process
Name
|
CENTRIFUGE_KREPORT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
report
file
|
File containing the centrifuge classification report *.{txt}
|
db
directory
|
Path to directory containing centrifuge database files |
|---|
Output
2 channels
#1
kreport
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
File containing kraken-style report from centrifuge out files. *.{txt}
|
#2
versions_centrifuge
tuple
${task.process}
string
|
The name of the process |
|---|---|
centrifuge
string
|
The name of the tool |
centrifuge --version 2>&1 | sed '1!d;s/.* version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| centrifuge | Centrifuge is a classifier for metagenomic sequences. | https://ccb.jhu.edu/software/centrifuge/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:30:16 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcentrifuge%2Fkreport/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/centrifuge/kreport/blobs/sha256:5a94c3d8128ee82216a38a4e5fc0a4935b19b2a367e26dd7c6b6629654fce946 |
| Size | 2.5 KB |
| Checksum | sha256:5a94c3d8128ee82216a38a4e5fc0a4935b19b2a367e26dd7c6b6629654fce946 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:30:16 (UTC) | 1 | 2.5 KB | - |