Nextflow Registry | nf-core/catpack/summarise@0.0.0-0c7146d

nf-core/catpack/summarise @ 0.0.0-0c7146d

Summarises results from CAT/BAT/RAT classification steps

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Summarises results from CAT/BAT/RAT classification steps

Add the following snippet to your workflow script to include this module.

include { CATPACK_SUMMARISE } from 'nf-core/catpack/summarise'

MIT License

Process

`Name`	`CATPACK_SUMMARISE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`classification` file	CAT/BAT/RAT classification table annotated with official names (from CAT_pack addnames) `*.txt`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`contigs` file	Optional nucleotide FASTA file containing long DNA sequences such as contigs that were classified (only if classification table is from CAT_pack contigs) `*.{fasta,fna,fa,fas}`

Output 2 channels

#1 txt tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.txt` file	Summary statistics table of CAT/BAT/RAT results `*.txt`

#2 versions_catpack tuple

`${task.process}` string	The process the versions were collected from
`catpack` string	The tool name
`CAT_pack --version \| sed 's/CAT_pack pack v//g;s/ .*//g'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
catpack	CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)	https://github.com/MGXlab/CAT_pack

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:29:27 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcatpack%2Fsummarise/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/catpack/summarise/blobs/sha256:ee215d46fbd22243da9df80d8f2efd9d56ad25167b9db0796accc5132d96431c
Size	3.0 KB
Checksum	sha256:ee215d46fbd22243da9df80d8f2efd9d56ad25167b9db0796accc5132d96431c
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:29:27 (UTC)		1	3.0 KB	-