nf-core/catpack/addnames @ 0.0.0-0c7146d
Summary
Taxonomic classification of long DNA sequences and metagenome assembled genomes (e.g. MAGs / bins).
Get started
Add the following snippet to your workflow script to include this module.
include { CATPACK_ADDNAMES } from 'nf-core/catpack/addnames'
License
MIT License
Process
Name
|
CATPACK_ADDNAMES |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
input
file
|
Classification or ORF2LCA output file from CAT/BAT/RAT *.txt
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. |
|---|---|
taxonomy
directory
|
Directory containing taxonomy files: names.dmp, nodes.dmp, acc2taxid.txt */
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.txt
map
|
CAT/BAT/RAT classification file with added taxonomic names *.{bam,cram,sam}
|
#2
versions_catpack
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
catpack
string
|
The tool name |
CAT_pack --version | sed 's/CAT_pack pack v//g;s/ .*//g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| catpack | CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) | https://github.com/MGXlab/CAT_pack |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:29:15 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcatpack%2Faddnames/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/catpack/addnames/blobs/sha256:0f69142dc7b9fedb41f13c59e0014620cd27a4af043461ede4845b7ec7b25b54 |
| Size | 2.7 KB |
| Checksum | sha256:0f69142dc7b9fedb41f13c59e0014620cd27a4af043461ede4845b7ec7b25b54 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:29:15 (UTC) | 1 | 2.7 KB | - |