nf-core/bracken/combinebrackenoutputs @ 0.0.0-0c7146d
Summary
Combine output of metagenomic samples analyzed by bracken.
Get started
Add the following snippet to your workflow script to include this module.
include { BRACKEN_COMBINEBRACKENOUTPUTS } from 'nf-core/bracken/combinebrackenoutputs'
License
MIT License
Process
Name
|
BRACKEN_COMBINEBRACKENOUTPUTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
List of output files from bracken *
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Combined output in table format *.txt
|
#2
versions_combine_bracken_outputs
tuple
${task.process}
string
|
The name of the process |
|---|---|
combine_bracken_outputs
string
|
The name of the tool |
bracken -v | cut -f2 -d"v"
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bracken | Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. | https://ccb.jhu.edu/software/bracken/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:28:30 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbracken%2Fcombinebrackenoutputs/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bracken/combinebrackenoutputs/blobs/sha256:c86fcf7f55d0e8552899e13d4a5e134f44d7d2aac314fff29fe0c0cf86ab9ce1 |
| Size | 2.6 KB |
| Checksum | sha256:c86fcf7f55d0e8552899e13d4a5e134f44d7d2aac314fff29fe0c0cf86ab9ce1 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:28:30 (UTC) | 1 | 2.6 KB | - |