nf-core/bowtie/build @ 0.0.0-0c7146d
Summary
Create bowtie index for reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { BOWTIE_BUILD } from 'nf-core/bowtie/build'
License
MIT License
Process
Name
|
BOWTIE_BUILD |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing information about the genome fasta e.g. [ id:'test' ] |
|---|---|
fasta
file
|
Input genome fasta file |
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing information about the genome fasta e.g. [ id:'test' ] |
|---|---|
bowtie
string
|
Folder containing bowtie genome index files *.ebwt
|
#2
versions_bowtie
tuple
${task.process}
string
|
The name of the process |
|---|---|
bowtie
string
|
Folder containing bowtie genome index files *.ebwt
|
bowtie --version 2>&1 | sed -n 's/.*bowtie-align-s version //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bowtie | bowtie is a software package for mapping DNA sequences against a large reference genome, such as the human genome. | http://bowtie-bio.sourceforge.net/index.shtml |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:28:22 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbowtie%2Fbuild/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bowtie/build/blobs/sha256:5e803debd44d50dad7f020b6ce0a7f5e851574c605d8047810cba96ce8f79cde |
| Size | 2.6 KB |
| Checksum | sha256:5e803debd44d50dad7f020b6ce0a7f5e851574c605d8047810cba96ce8f79cde |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:28:22 (UTC) | 1 | 2.6 KB | - |