Nextflow Registry | nf-core/blat@0.0.0-0c7146d

nf-core/blat @ 0.0.0-0c7146d

Queries a sequence subject

blat sequence search

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @d-jch

Maintainers: @d-jch

Queries a sequence subject

Add the following snippet to your workflow script to include this module.

include { BLAT } from 'nf-core/blat'

MIT License

Process

`Name`	`BLAT`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`query` file	Sequence file `*.{fasta,fasta.gz,fa,fa.gz,nib,2bit}`

#2 tuple

`meta2` map	Groovy Map containing subject information e.g. `[ id:'test', single_end:false ]`
`subject` file	Sequence file `*.{fa,nib,2bit}`

Output 2 channels

#1 psl tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.psl` file	Search results `*.{psl}`

#2 versions_blat tuple

`${task.process}` string	The name of the process
`blat` string	The name of the tool
`blat 2>&1 \| sed '1!d;s/^.BLAT v. //;s/ fast.//'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
blat	BLAT is a bioinformatics software tool which performs rapid mRNA/DNA and cross-species protein alignments.	https://kentinformatics.com/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:28:13 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fblat/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/blat/blobs/sha256:5cd1badfed894aecb9a47cd80aad20854a4689e4fb09a40ff3d083d53971aab6
Size	2.4 KB
Checksum	sha256:5cd1badfed894aecb9a47cd80aad20854a4689e4fb09a40ff3d083d53971aab6
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:28:13 (UTC)		1	2.4 KB	-