nf-core/blast/tblastn @ 0.0.0-0c7146d
Summary
Queries a BLAST DNA database
Get started
Add the following snippet to your workflow script to include this module.
include { BLAST_TBLASTN } from 'nf-core/blast/tblastn'
License
MIT License
Process
Name
|
BLAST_TBLASTN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input fasta file containing queries sequences *.{fa,fasta,fa.gz,fasta.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing db information e.g. [ id:'test2', single_end:false ] |
|---|---|
db
directory
|
Directory containing the blast database *
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
File containing blastn hits *.txt
|
#2
versions_tblastn
tuple
${task.process}
string
|
The name of the process |
|---|---|
tblastn
string
|
The name of the tool |
tblastn -version 2>&1 | sed 's/^.*tblastn: //; s/ .*\$//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| blast | Protein to Translated Nucleotide BLAST. | https://blast.ncbi.nlm.nih.gov/Blast.cgi |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:28:10 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fblast%2Ftblastn/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/blast/tblastn/blobs/sha256:39d51249b4174cf382ad2a4c0eb4d53e4f03e6d43c68b0c0da846b37753816dc |
| Size | 2.8 KB |
| Checksum | sha256:39d51249b4174cf382ad2a4c0eb4d53e4f03e6d43c68b0c0da846b37753816dc |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:28:10 (UTC) | 1 | 2.8 KB | - |