nf-core/bio2zarr/vcfpartition @ 0.0.0-72348f0
Summary
Outputs a set of region strings that partition indexed VCF/BCF files for parallel processing.
Get started
Add the following snippet to your workflow script to include this module.
include { BIO2ZARR_VCFPARTITION } from 'nf-core/bio2zarr/vcfpartition'
License
MIT License
Process
Name
|
BIO2ZARR_VCFPARTITION |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
Indexed VCF/BCF file to partition *.{vcf,vcf.gz,bcf,bcf.gz}
|
index
file
|
Index for the VCF/BCF file *.{tbi,csi}
|
Output
2 channels
#1
partitions
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
The output tab-delimited region strings and the file path *.{tsv}
|
#2
versions_vcfpartition
tuple
${task.process}
string
|
The name of the process |
|---|---|
vcfpartition
string
|
The name of the tool |
vcfpartition --version | sed 's/.* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bio2zarr | Convert bioinformatics data to Zarr | https://sgkit-dev.github.io/bio2zarr/ |
| Version | 0.0.0-72348f0 |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 15 Apr 2026 21:15:30 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbio2zarr%2Fvcfpartition/0.0.0-72348f0/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bio2zarr/vcfpartition/blobs/sha256:d0c65f6ab0fc4fa466d90ecbf4eb4128acaf09c23fcf5e2cee2bc227230bfa4c |
| Size | 2.7 KB |
| Checksum | sha256:d0c65f6ab0fc4fa466d90ecbf4eb4128acaf09c23fcf5e2cee2bc227230bfa4c |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-72348f0 | 15 Apr 2026 21:15:30 (UTC) | 1 | 2.7 KB | - |