nf-core/bftools/showinf @ 0.0.0-0c7146d
Summary
Extract OME xml data from OME-tif
Get started
Add the following snippet to your workflow script to include this module.
include { BFTOOLS_SHOWINF } from 'nf-core/bftools/showinf'
License
MIT License
Process
Name
|
BFTOOLS_SHOWINF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
image
file
|
Path to image file containing OME metadata |
Output
2 channels
#1
xml
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.xml.gz
file
|
Compressed XML with OME tag metadata |
#2
versions_bftools
tuple
${task.process}
string
|
The name of the process |
|---|---|
bftools
string
|
The name of the tool |
showinf -version | sed -n '1s/[^ ]* //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bftools | Suite of tools to handle several imaging protocols. | https://www.openmicroscopy.org/bio-formats |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:26:45 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbftools%2Fshowinf/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bftools/showinf/blobs/sha256:a34550cf44233cf87206373358f7a377717b5b76d25a779a995e20d1966d8db9 |
| Size | 2.2 KB |
| Checksum | sha256:a34550cf44233cf87206373358f7a377717b5b76d25a779a995e20d1966d8db9 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:26:45 (UTC) | 1 | 2.2 KB | - |