nf-core/bedtools/closest @ 0.0.0-0c7146d
Summary
For each feature in A, finds the closest feature (upstream or downstream) in B.
Get started
Add the following snippet to your workflow script to include this module.
include { BEDTOOLS_CLOSEST } from 'nf-core/bedtools/closest'
License
MIT License
Process
Name
|
BEDTOOLS_CLOSEST |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input_1
file
|
The file to find the closest features of *.{bed,vcf,gff}(.gz)?
|
input_2
list
|
The input file(s) to find the closest features from *.{bed,vcf,gff}(.gz)?
|
fasta_fai
file
|
The index of the FASTA reference. Needed when the argument *.fai
|
|---|
Output
2 channels
#1
output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.${extension}
file
|
The resulting BED file containing the closest features *.{bed,vcf,gff}
|
#2
versions_bedtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
bedtools
string
|
The name of the tool |
bedtools --version | sed -e 's/bedtools v//g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bedtools | A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:26:05 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbedtools%2Fclosest/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bedtools/closest/blobs/sha256:387a74ab20e093b8ec7f10b956f4a0e2e6c693872a0fbc9811d6116c7502f16d |
| Size | 2.7 KB |
| Checksum | sha256:387a74ab20e093b8ec7f10b956f4a0e2e6c693872a0fbc9811d6116c7502f16d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:26:05 (UTC) | 1 | 2.7 KB | - |