nf-core/bcftools/sort @ 0.0.0-0c7146d
Summary
Sorts VCF files
Get started
Add the following snippet to your workflow script to include this module.
include { BCFTOOLS_SORT } from 'nf-core/bcftools/sort'
License
MIT License
Process
Name
|
BCFTOOLS_SORT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
The VCF/BCF file to be sorted *.{vcf.gz,vcf,bcf}
|
Output
4 channels
#1
csi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.csi
file
|
Default VCF file index *.csi
|
#2
tbi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tbi
file
|
Alternative VCF file index *.tbi
|
#3
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{vcf,vcf.gz,bcf,bcf.gz}
file
|
Sorted VCF file *.{vcf.gz}
|
#4
versions_bcftools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bcftools
string
|
The tool name |
bcftools --version | sed '1!d; s/^.*bcftools //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sort | Sort VCF files by coordinates. | http://samtools.github.io/bcftools/bcftools.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:25:44 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Fsort/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bcftools/sort/blobs/sha256:f4519a6d4eac158d6d8bb91c1c74dc52edba3ad71c82959bd0127fcb7cd9256e |
| Size | 3.4 KB |
| Checksum | sha256:f4519a6d4eac158d6d8bb91c1c74dc52edba3ad71c82959bd0127fcb7cd9256e |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:25:44 (UTC) | 1 | 3.4 KB | - |