nf-core/bbmap/bbnorm @ 0.0.0-0c7146d
Summary
BBNorm is designed to normalize coverage by down-sampling reads over high-depth areas of a genome, to result in a flat coverage distribution.
Get started
Add the following snippet to your workflow script to include this module.
include { BBMAP_BBNORM } from 'nf-core/bbmap/bbnorm'
License
MIT License
Process
Name
|
BBMAP_BBNORM |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fastq
file
|
fastq file *.{fastq,fq}(.gz)?
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
log file *.log
|
#2
fastq
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fastq.gz
file
|
fastq file *.{fastq, fq}.gz
|
#3
versions_bbmap
tuple
${task.process}
string
|
The name of the process |
|---|---|
bbmap
string
|
The name of the tool |
bbversion.sh | grep -v "Duplicate cpuset"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bbmap | BBMap is a short read aligner, as well as various other bioinformatic tools. | https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:24:42 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbbmap%2Fbbnorm/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bbmap/bbnorm/blobs/sha256:7e99ed38be19d614877811034b845f6ede762c19e3b736a4a43d0b2225b4d684 |
| Size | 3.3 KB |
| Checksum | sha256:7e99ed38be19d614877811034b845f6ede762c19e3b736a4a43d0b2225b4d684 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:24:42 (UTC) | 1 | 3.3 KB | - |