Nextflow Registry | nf-core/barrnap@0.0.0-0c7146d

nf-core/barrnap @ 0.0.0-0c7146d

barrnap uses a hmmer profile to find rrnas in reads or contig fasta files

rrna sequences removal

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @danilodileo @srisarya

Maintainers: @danilodileo

barrnap uses a hmmer profile to find rrnas in reads or contig fasta files

Add the following snippet to your workflow script to include this module.

include { BARRNAP } from 'nf-core/barrnap'

MIT License

Process

`Name`	`BARRNAP`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`fasta` file	fasta file `*.fasta`
`dbname` string	database to use(bacteria, archaea, eukaryota, metazoan mitochondria)

Output 2 channels

#1 gff tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.gff` file	gff file containing coordinates of genes `*.gff`

#2 versions_barrnap tuple

`${task.process}` string	The name of the process
`barrnap` string	The name of the tool
`barrnap --version 2>&1 \| sed "s/barrnap //g"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
barrnap	Barrnap predicts the location of ribosomal RNA genes in genomes (bacteria, archaea, metazoan mitochondria and eukaryotes).	https://github.com/tseemann/barrnap

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:24:30 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbarrnap/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/barrnap/blobs/sha256:a07c09e6f3261aa648807ed687cba315a1fa07df35564da23a100fa720cc95a2
Size	2.3 KB
Checksum	sha256:a07c09e6f3261aa648807ed687cba315a1fa07df35564da23a100fa720cc95a2
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:24:30 (UTC)		1	2.3 KB	-