nf-core/bamtools/convert @ 0.0.0-0c7146d
Summary
BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { BAMTOOLS_CONVERT } from 'nf-core/bamtools/convert'
License
MIT License
Process
Name
|
BAMTOOLS_CONVERT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM file *.bam
|
Output
2 channels
#1
data
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{bed,fasta,fastq,json,pileup,sam,yaml}
file
|
Output file *.{bed,fasta,fastq,json,pileup,sam,yaml}
|
#2
versions_bamtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
bamtools
string
|
The name of the tool |
bamtools --version | sed '2!d;s/bamtools //g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bamtools | C++ API & command-line toolkit for working with BAM data | http://github.com/pezmaster31/bamtools |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:23:49 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbamtools%2Fconvert/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bamtools/convert/blobs/sha256:9bc4b79856b941414f830992b70e05667482307d5eacd258e8742a2adaaa05d7 |
| Size | 3.0 KB |
| Checksum | sha256:9bc4b79856b941414f830992b70e05667482307d5eacd258e8742a2adaaa05d7 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:23:49 (UTC) | 1 | 3.0 KB | - |