Nextflow Registry | nf-core/bamstats/generalstats@0.0.0-0c7146d

nf-core/bamstats/generalstats @ 0.0.0-0c7146d

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bam statistics genomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @johnoooh

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Add the following snippet to your workflow script to include this module.

include { BAMSTATS_GENERALSTATS } from 'nf-core/bamstats/generalstats'

MIT License

Process

`Name`	`BAMSTATS_GENERALSTATS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`bam` file	Sorted BAM/CRAM/SAM file `*.{bam,cram,sam}`

Output 2 channels

#1 json tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.json` file	json containing bam statistics `*.json`

#2 versions_bamstats tuple

`${task.process}` string	The name of the process
`bamstats` string	The name of the tool
`bamstats --version \| grep "version: " \| sed -e s"/version: //"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
bamstats	A command line tool to compute mapping statistics from a BAM file	https://github.com/guigolab/bamstats/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:23:45 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbamstats%2Fgeneralstats/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bamstats/generalstats/blobs/sha256:af7356b65a11932971da0450904266022381f529b9172210288204105566fa98
Size	2.2 KB
Checksum	sha256:af7356b65a11932971da0450904266022381f529b9172210288204105566fa98
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:23:45 (UTC)		1	2.2 KB	-