Nextflow Registry | nf-core/autocycler/resolve@0.0.0-0c7146d

nf-core/autocycler/resolve @ 0.0.0-0c7146d

Resolve trimmed assembly graphs into final contigs within Autocycler.

autocycler genome-assembly graph-resolution long-read

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @dwells-eit @eit-maxlcummins

Maintainers: @dwells-eit

Resolve trimmed assembly graphs into final contigs within Autocycler.

Add the following snippet to your workflow script to include this module.

include { AUTOCYCLER_RESOLVE } from 'nf-core/autocycler/resolve'

MIT License

Process

`Name`	`AUTOCYCLER_RESOLVE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`gfa` file	Trimmed assembly graph in GFA format from the previous step. `*.gfa`

Output 4 channels

#1 merged tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`resolve/${prefix}/${prefix}_4_merged.gfa` file	Merged assembly graph after bridging. `resolve//_4_merged.gfa`

#2 bridged tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`resolve/${prefix}/${prefix}_3_bridged.gfa` file	Assembly graph with bridges resolved. `resolve//_3_bridged.gfa`

#3 resolved tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`resolve/${prefix}/${prefix}_5_final.gfa` file	Final resolved assembly graph. `resolve//_5_final.gfa`

#4 versions_autocycler tuple

`${task.process}` string	The name of the process
`autocycler` string	The name of the tool
`autocycler --version \| sed 's/^[^ ]* //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
autocycler	A tools for generating consensus long-read assemblies for bacterial genomes.	https://github.com/rrwick/Autocycler/wiki

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:23:22 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fautocycler%2Fresolve/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/autocycler/resolve/blobs/sha256:d8ad733284ead5295b76deb58b977c6cbd1e4829d282ba6b7e1484e05153cfc3
Size	3.0 KB
Checksum	sha256:d8ad733284ead5295b76deb58b977c6cbd1e4829d282ba6b7e1484e05153cfc3
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:23:22 (UTC)		1	3.0 KB	-