nf-core/ariba/run @ 0.0.0-1d8acb2
Summary
Query input FASTQs against Ariba formatted databases
Get started
Add the following snippet to your workflow script to include this module.
include { ARIBA_RUN } from 'nf-core/ariba/run'
License
MIT License
Process
Name
|
ARIBA_RUN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
Paired-end reads in FASTQ format *_R[1|2].{fastq.gz,fq.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
db
file
|
An Ariba prepared database *.tar.gz
|
Output
2 channels
#1
results
tuple
meta
file
|
A directory of Ariba analysis outputs *
|
|---|---|
${prefix}/*
file
|
A directory of Ariba analysis outputs *
|
#2
versions_ariba
tuple
${task.process}
string
|
The name of the process |
|---|---|
ariba
string
|
The name of the tool |
ariba version 2>&1 | sed '1!d;s/ARIBA version: //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ariba | ARIBA: Antibiotic Resistance Identification By Assembly | https://sanger-pathogens.github.io/ariba/ |
| Version | 0.0.0-1d8acb2 |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 10:25:32 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fariba%2Frun/0.0.0-1d8acb2/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ariba/run/blobs/sha256:f98c49a12f6ff156a515f24e37de5337d51036e95a4d86ebe580adc8bb771426 |
| Size | 2.8 KB |
| Checksum | sha256:f98c49a12f6ff156a515f24e37de5337d51036e95a4d86ebe580adc8bb771426 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-1d8acb2 | 08 Apr 2026 10:25:32 (UTC) | 1 | 2.8 KB | - |