nf-core/antismash/antismashlitedownloaddatabases @ 0.0.0-1d8acb2
Summary
antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters. This module downloads the antiSMASH databases for conda and docker/singularity runs.
Get started
Add the following snippet to your workflow script to include this module.
include { ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES } from 'nf-core/antismash/antismashlitedownloaddatabases'
License
MIT License
Name
|
ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES |
|---|
database_css
directory
|
antismash/outputs/html/css folder which is being created during the antiSMASH database downloading step. These files are normally downloaded by download-antismash-databases itself, and must be retrieved by the user by manually running the command with conda or a standalone installation of antiSMASH. Therefore we do not recommend using this module for production pipelines, but rather require users to specify their own local copy of the antiSMASH database in pipelines. css
|
|---|
database_detection
directory
|
antismash/detection folder which is being created during the antiSMASH database downloading step. These files are normally downloaded by download-antismash-databases itself, and must be retrieved by the user by manually running the command with conda or a standalone installation of antiSMASH. Therefore we do not recommend using this module for production pipelines, but rather require users to specify their own local copy of the antiSMASH database in pipelines. detection
|
|---|
database_modules
directory
|
antismash/modules folder which is being created during the antiSMASH database downloading step. These files are normally downloaded by download-antismash-databases itself, and must be retrieved by the user by manually running the command with conda or a standalone installation of antiSMASH. Therefore we do not recommend using this module for production pipelines, but rather require users to specify their own local copy of the antiSMASH database in pipelines. modules
|
|---|
database
antismash_db
directory
|
Download directory for antiSMASH databases antismash_db
|
|---|
antismash_dir
antismash_dir
directory
|
antismash installation folder which is being modified during the antiSMASH database downloading step. The modified files are normally downloaded by download-antismash-databases itself, and must be retrieved by the user by manually running the command with conda or a standalone installation of antiSMASH. Therefore we do not recommend using this module for production pipelines, but rather require users to specify their own local copy of the antiSMASH database and installation folder in pipelines. antismash_dir
|
|---|
versions_antismash
tuple
${task.process}
string
|
The name of the process |
|---|---|
antismash-lite
string
|
The name of the tool |
antismash --version | sed 's/antiSMASH //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| antismash | antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell | https://docs.antismash.secondarymetabolites.org |
| Version | 0.0.0-1d8acb2 |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 10:25:30 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fantismash%2Fantismashlitedownloaddatabases/0.0.0-1d8acb2/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/antismash/antismashlitedownloaddatabases/blobs/sha256:285dfbefc70b139d4080faad2b2e484d20663158c13f8351e8aead44fee416c7 |
| Size | 3.7 KB |
| Checksum | sha256:285dfbefc70b139d4080faad2b2e484d20663158c13f8351e8aead44fee416c7 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-1d8acb2 | 08 Apr 2026 10:25:30 (UTC) | 1 | 3.7 KB | - |