nf-core/annosine @ 0.0.0-0c7146d
Summary
Accelerating de novo SINE annotation in plant and animal genomes
Get started
Add the following snippet to your workflow script to include this module.
include { ANNOSINE } from 'nf-core/annosine'
License
MIT License
Process
Name
|
ANNOSINE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Input genome assembly *.{fasta,fa,fsa}
|
mode
integer
|
Choose the running mode of the program. 1--Homology-based method; 2--Structure-based method; 3--Hybrid of homology-based and structure-based method. |
|---|
Output
3 channels
#1
fa
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.fa
map
|
Non-redundant SINE library with serial number *.{fa}
|
#2
log
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.log
file
|
AnnoSINE_v2 log file *.{log}
|
#3
versions_annosine
tuple
${task.process}
string
|
The name of the process |
|---|---|
annosine
string
|
The name of the tool |
pip show annosine2 | sed -n 's/Version: //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| annosine | AnnoSINE_v2 - SINE Annotation Tool for Plant and Animal Genomes | https://github.com/liaoherui/AnnoSINE_v2 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:22:22 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fannosine/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/annosine/blobs/sha256:a75d43917b06acb62205c32331e8d61b219a57caa2b1a54d9d2fd06357f58a31 |
| Size | 2.7 KB |
| Checksum | sha256:a75d43917b06acb62205c32331e8d61b219a57caa2b1a54d9d2fd06357f58a31 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:22:22 (UTC) | 1 | 2.7 KB | - |