Nextflow Registry | nf-core/anndata/getsize@0.0.0-0c7146d

nf-core/anndata/getsize @ 0.0.0-0c7146d

Get the size (n_cells or n_genes) of an anndata object stored as a h5ad file

anndata single-cell scanpy

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @LeonHafner

Maintainers: @LeonHafner

Get the size (n_cells or n_genes) of an anndata object stored as a h5ad file

Add the following snippet to your workflow script to include this module.

include { ANNDATA_GETSIZE } from 'nf-core/anndata/getsize'

MIT License

Process

`Name`	`ANNDATA_GETSIZE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`h5ad` file	H5AD file of anndata object `*.h5ad`

`size_type` string	either 'cells', 'genes', 'obs', or 'var'

Output 2 channels

#1 size tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.txt` file	text file containing the requested size `*.txt`

#2 versions_anndata

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
anndata	An annotated data matrix.	http://anndata.rtfd.io

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:22:20 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fanndata%2Fgetsize/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/anndata/getsize/blobs/sha256:069cc04acc49333c958d6178c08459d8552496c99d82b776f5630a06492bcac9
Size	3.2 KB
Checksum	sha256:069cc04acc49333c958d6178c08459d8552496c99d82b776f5630a06492bcac9
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:22:20 (UTC)		1	3.2 KB	-