Nextflow Registry | nf-core/ampir@0.0.0-0c7146d

nf-core/ampir @ 0.0.0-0c7146d

A fast and user-friendly method to predict antimicrobial peptides (AMPs) from any given size protein dataset. ampir uses a supervised statistical machine learning approach to predict AMPs.

ampir amp antimicrobial peptide prediction

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jasmezz

Maintainers: @jasmezz

Summary

A fast and user-friendly method to predict antimicrobial peptides (AMPs) from any given size protein dataset. ampir uses a supervised statistical machine learning approach to predict AMPs.

Get started

Add the following snippet to your workflow script to include this module.

include { AMPIR } from 'nf-core/ampir'

License

MIT License

Process

`Name`	`AMPIR`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`faa` file	FASTA file containing amino acid sequences `*.{faa,fasta}`

`model` string	Built-in model for AMP prediction `{precursor,mature}`

`min_length` integer	Minimum protein length for which predictions will be generated `[0-9]+`

`min_probability` float	Cut-off for AMP prediction `[0-9].[0-9]+`

Output 3 channels

#1 amps_faa tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.faa` file	File containing AMP predictions in amino acid FASTA format `*.{faa}`

#2 amps_tsv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tsv` file	File containing AMP predictions in TSV format `*.tsv`

#3 versions_ampir tuple

`${task.process}` string	The name of the process
`ampir` string	The name of the tool
`Rscript -e "library(ampir); cat(paste((unlist(packageVersion('ampir'))), collapse = '.'))"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
ampir	A toolkit to predict antimicrobial peptides from protein sequences on a genome-wide scale.	https://github.com/Legana/ampir

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:21:49 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fampir/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ampir/blobs/sha256:8f7f8bdf010518c411c2cdae2abc659018a23387e6b52ef16909c10fbce8119e
Size	3.1 KB
Checksum	sha256:8f7f8bdf010518c411c2cdae2abc659018a23387e6b52ef16909c10fbce8119e
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:21:49 (UTC)		1	3.1 KB	-