nf-core/ampcombi2/cluster @ 0.0.0-0c7146d
Summary
A submodule that clusters the merged AMP hits generated from ampcombi2/parsetables and ampcombi2/complete using MMseqs2 cluster.
Get started
Add the following snippet to your workflow script to include this module.
include { AMPCOMBI2_CLUSTER } from 'nf-core/ampcombi2/cluster'
License
MIT License
Name
|
AMPCOMBI2_CLUSTER |
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summary_file
file
|
A file corresponding to the Ampcombi_summary.tsv that is generated by running 'ampcombi complete'. It is a file containing all the merged AMP results from all samples and all tools. *.tsv
|
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log
Ampcombi_cluster.log
file
|
A log file that captures the standard output for the entire process in a log file. Can be activated by *.log
|
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cluster_tsv
Ampcombi_summary_cluster.tsv
file
|
A file containing all the results from the merged input table 'Ampcombi_summary.tsv', but also including the cluster id number. The clustering is done using MMseqs2 cluster. *.tsv
|
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rep_cluster_tsv
Ampcombi_summary_cluster_representative_seq.tsv
file
|
A file containing the representative sequences of the clusters estimated by the tool. The clustering is done using MMseqs2 cluster. *.tsv
|
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versions_ampcombi
tuple
${task.process}
string
|
The name of the process |
|---|---|
ampcombi
string
|
The name of the tool |
ampcombi --version | sed 's/ampcombi //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ampcombi2/cluster | A tool for clustering all AMP hits found across many samples and supporting many AMP prediction tools. | https://github.com/paleobiotechnology/AMPcombi |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 8098ab9d800821e8b18e17fd515ed1e4ebc523f4 |
| Release Date | 08 Apr 2026 18:21:43 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fampcombi2%2Fcluster/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ampcombi2/cluster/blobs/sha256:a89b75bde3bd82cfae372aa3df6c4ba0001f2dc20745ae525eb92288ca223ef4 |
| Size | 2.5 KB |
| Checksum | sha256:a89b75bde3bd82cfae372aa3df6c4ba0001f2dc20745ae525eb92288ca223ef4 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:21:43 (UTC) | 1 | 2.5 KB | - |